Needle
An application for fast and efficient searches of NGS data.
Loading...
Searching...
No Matches
Public Member Functions | Public Attributes | List of all members
estimate_ibf_arguments Struct Reference

arguments used for estimate, ibf, ibfmin More...

#include </build/reproducible-path/seqan-needle-1.0.2+ds/include/shared.h>

Inheritance diagram for estimate_ibf_arguments:
min_arguments all_arguments

Public Member Functions

template<class Archive >
void save (Archive &archive) const
 
template<class Archive >
void load (Archive &archive)
 

Public Attributes

bool compressed = false
 
std::vector< uint16_t > expression_thresholds {}
 
uint8_t number_expression_thresholds {}
 
bool samplewise {false}
 
- Public Attributes inherited from min_arguments
uint8_t k {20}
 
seqan3::seed s {0x8F3F73B5CF1C9ADEULL}
 
seqan3::shape shape = seqan3::ungapped{k}
 
seqan3::window_size w_size {60}
 
- Public Attributes inherited from all_arguments
std::filesystem::path path_out {"./"}
 
uint8_t threads {1}
 

Detailed Description

arguments used for estimate, ibf, ibfmin

Member Function Documentation

◆ load()

template<class Archive >
void estimate_ibf_arguments::load ( Archive &  archive)
inline

◆ save()

template<class Archive >
void estimate_ibf_arguments::save ( Archive &  archive) const
inline

Member Data Documentation

◆ compressed

bool estimate_ibf_arguments::compressed = false

◆ expression_thresholds

std::vector<uint16_t> estimate_ibf_arguments::expression_thresholds {}

◆ number_expression_thresholds

uint8_t estimate_ibf_arguments::number_expression_thresholds {}

◆ samplewise

bool estimate_ibf_arguments::samplewise {false}

The documentation for this struct was generated from the following file: