Features
- The index additionally stores the original file paths, window size, k-mer size, number of parts, and the data layout (#34, #47, #57, #58):
--window
, --kmer
, --parts
, and --compressed
are no longer supported when running raptor search
.
- Indices built with an older version of raptor cannot be used with version 2.0.0.
- Old indices can be converted by running
raptor upgrade
.
- New output format (#47):
- Output includes a header (lines starting with '#').
- The header assigns an integer to each input file, which are then used in the results:
#0 /dev/shm/test/data/bin1.fa
#1 /dev/shm/test/data/bin2.fa
#2 /dev/shm/test/data/bin3.fa
#3 /dev/shm/test/data/bin4.fa
#QUERY_NAME USER_BINS
query1 0
query2 0,1
query3 2,3
- The list of bins does no longer contain a trailing comma (the last line would have looked like this before 2.0.0:
query3 2,3,
).
- Added support for some parts of the SOCKS Interface (#35).
Misc
- Passing a list of bins is no longer supported. Use a file containing paths to the files instead (#35).
Bug fixes
Except the last entry in this list, these bugs are expected to not be present in version 1.1.0.
- Validation error when using
--compute-minimiser
(#25).
- Typos/Errors in
util
scripts (#32, #39, #40, #48, #51).
- Partitioned IBF not working (#50, #53).
- Rare segmentation fault in threshold computation (#54).
1.1.0
Features
- Raptor accepts a text file containing the path to a bin on each line (#16).
Bug fixes
- Threshold option not working (#14).
1.0.1
Bug fixes
- Reduced the number of open file handles (#10).